Datasets

Pseudo-bulk datasets

1. Tabular Muris: source figshare
2. processed data ZIP (including all the benchmarking files and other files)

Training datasets (real)

PBMC datasets

1. data6k from healthy donor source process TXT H5AD
2. data8k from healthy donor source process TXT H5AD
3. data10k from healthy donor source process TXT H5AD
4. training set in Scaden H5AD
5. combined training set of data6k,8k,10k H5AD

Human brain dataset

1. Darmanis's dataset source process TXT H5AD

Mouse brain dataset

1. Chen's dataset source process TXT H5AD

Pancreas/islet dataset

1. Baron's pancreas dataset source TXT H5AD
2. Baron's islet dataset (selecting islet cells from pancreas dataset) TXT H5AD

Bulk RNA-seq dataset

PBMC datasets

1. PBMC datasets from healthy donor

   a. Monaco's PBMC data source S13cohort fractions b. Newman's PBMC data source fractions

2. COVID-19 PBMC dataset source CSV Meta
3. HIV PBMC dataset source CSV
4. HCV PBMC dataset source CSV

Islet datasets

1. COVID-19 islet dataset source CSV
2. T2DM islet dataset source CSV Meta

Alzheimer's Disease human brain dataset

1. ROSMAP dataset (need permission) source